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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11517998_11522009_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11517998 - 11522009
Intron Length:
4012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTTCCTTGAGA
Flanking Amino Acid:
RAIQRQQTQQVQSPVDSATM
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.6
0.62
0.9
68.7
42
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
73.1
0.72
1.6
80.79
34.6

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874