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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11522869_11523634_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11522869 - 11523634
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
TTCCTCTCGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
ATTAACTGAATT
Flanking Amino Acid:
LQKIFEDPTDGDLHKLKSPT
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74
36.6
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
75.6
0.58
0.9
72.3
32.5
Minor 5ss
41.7
-0.9
2.5
45.5
42.9
Minor BPS
59
0.36
1.7
77.66
38.2

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874