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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11526821_11527494_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11526821 - 11527494
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
CCCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GTTTCCCCAACT
Flanking Amino Acid:
KVIQNLANFAKFGNKEEYMA
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
69.9
41.1
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
84.7
0.78
0.7
79.6
25.9
Minor 5ss
34.7
-1.7
3.6
48.4
42.3
Minor BPS
65
0.55
1.9
86.5
38.7

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874