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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11527732_11528609_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11527732 - 11528609
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCAT
5'SS Class:
major
3'SS Sequence:
TATTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCAATTTTATTT
Flanking Amino Acid:
LAFCKIINSYCVFPRELKEV
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.4
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
27.1
-2.6
3.3
35.2
42.4
Minor BPS
47.4
-0.1
1.5
57.27
40.1

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874