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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11528755_11532076_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11528755 - 11532076
Intron Length:
3322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GGTTTGTCATCC
Flanking Amino Acid:
VGQKYLHDALGEFIKALYES
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.6
0.64
0.9
71.8
38.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
42.7
-0.5
2.3
55.73
42.4

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874