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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11532222_11534528_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11532222 - 11534528
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CCTATTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTCATTTGACC
Flanking Amino Acid:
HILQSTGRAKDFLTDLVMSE
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83
0.74
0.8
80.5
31.5
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
59.1
0.27
1.5
69.22
35.8

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874