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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11535982_11537523_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11535982 - 11537523
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTTGCCTGAACT
Flanking Amino Acid:
SILGQDFCFEVTYSSGSKCF
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.5
0.73
0.9
74
41.1
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
70.6
0.73
1.6
84.75
41.8

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874