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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11547673_11560904_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11547673 - 11560904
Intron Length:
13232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTTCTGTGATT
Flanking Amino Acid:
AANTSPFKVPGFFSKRLKGS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.8
0.76
0.7
82.4
27.8
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
52.6
0.16
2
72.25
39.7

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874