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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11561012_11597984_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11561012 - 11597984
Intron Length:
36973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
CACCCATTCACC
Flanking Amino Acid:
EYPPDGAAKLEVPAERSPRR
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.4
39.5
Major BPS
69.9
0.5
1
73
31.5
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
31.6
-2.1
3.1
31.8
42.6
Minor BPS
46.2
-0.3
2
54.05
43.4

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874