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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11598109_11606671_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11598109 - 11606671
Intron Length:
8563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGAACGTTAACA
Flanking Amino Acid:
QLVLLNREKEVPMDGAQEPQ
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.2
0.61
0.8
73
30.7
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
51.9
0.05
2.1
63.07
42.4

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874