Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1165943_1167538_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1165943 - 1167538

Intron Length:

1596

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTTGG

5'SS Class:

major

3'SS Sequence:

GTGTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGGGAT

U12 Branch Point Sequence:

GGAGGAGTAAGT

Flanking Amino Acid:

LDMCWKQMDNSKKKFERECR

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

67.8

39.9

Major BPS

-0

1.5

48.8

46.3

Major PPT

82.3

0.73

0.8

81.2

36.5

Minor 5ss

36.6

-1.5

2.9

44.8

43.4

Minor BPS

33.3

-1.1

2.4

47.14

44.5

Associated Gene:

Gene:

FNBP1L

Ensembl Gene ID:

ENSAPLG00000003118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020087

1165299 - 1184533

19235

ENSAPLT00000003237

1133627 - 1181234

47608

ENSAPLT00000022217

1165299 - 1182672

17374