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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1168306_1169720_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1168306 - 1169720
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ACTTCAATAAAA
Flanking Amino Acid:
YYIVIPQIYKQLQEMDERRT
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
49.6
-0
2
65.69
39.9

Associated Gene:

Gene:
FNBP1L
Ensembl Gene ID:
ENSAPLG00000003118
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022217
1165299 - 1182672
17374
ENSAPLT00000020087
1165299 - 1184533
19235
ENSAPLT00000003237
1133627 - 1181234
47608