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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11690310_11690657_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11690310 - 11690657
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGCTTGTTCATT
Flanking Amino Acid:
ALCRRARLQPGETVLVTAGA
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81
0.7
0.7
73.1
31.7
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
46.3
-0.2
2.4
67.31
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015161
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015810
11688242 - 11692944
4703