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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11691422_11691863_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11691422 - 11691863
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCCAT
U12 Branch Point Sequence:
GGATACCCATCG
Flanking Amino Acid:
GGDVFKAALQSLAWEGRIVV
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
65
42.7
Major BPS
64.5
0.36
1.2
72.7
34.4
Major PPT
74.9
0.56
0.9
71.4
32.9
Minor 5ss
31.8
-2.1
3
38.9
46.2
Minor BPS
37.6
-1
2
40.67
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015161
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015810
11688242 - 11692944
4703