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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1169868_1170526_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1169868 - 1170526
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCCCATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAACT
Flanking Amino Acid:
LAAKSVDEHRDSQLVIDCFK
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.2
0.34
1
62.6
38.1
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
FNBP1L
Ensembl Gene ID:
ENSAPLG00000003118
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022217
1165299 - 1182672
17374
ENSAPLT00000020087
1165299 - 1184533
19235
ENSAPLT00000003237
1133627 - 1181234
47608