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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11702133_11702241_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11702133 - 11702241
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAG
U12 Branch Point Sequence:
AGCACCAAGAGC
Flanking Amino Acid:
NLATSPPGQDRSQSYDVYKE
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
46.3
-0.2
1.7
60.4
45.8
Major PPT
78.8
0.65
0.7
72.8
25.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
37.9
-0.9
2
42.31
38.3

Associated Gene:

Gene:
SEC16B
Ensembl Gene ID:
ENSAPLG00000015184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015857
11700934 - 11714153
13220