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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11703189_11703777_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11703189 - 11703777
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCCCC
5'SS Class:
major
3'SS Sequence:
GCTGTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
AGCTGCTGAATT
Flanking Amino Acid:
RPLVELHSLEVILHSTKEQE
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.8
44.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
79
0.65
0.8
76.9
37.3
Minor 5ss
38.1
-1.3
3.2
51.8
44.9
Minor BPS
51.1
0.11
1.9
67.9
43.1

Associated Gene:

Gene:
SEC16B
Ensembl Gene ID:
ENSAPLG00000015184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015857
11700934 - 11714153
13220