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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1170731_1173217_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1170731 - 1173217
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCACATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
KLWLFGKKPKPQSPPLTPTS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67
0.38
0.9
65.7
35.3
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
FNBP1L
Ensembl Gene ID:
ENSAPLG00000003118
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022217
1165299 - 1182672
17374