Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1170731_1178565_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1170731 - 1178565

Intron Length:

7835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAATT

5'SS Class:

strong_major

3'SS Sequence:

TTCATATTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GTTTCTTTAATA

Flanking Amino Acid:

KLWLFGKKPKGPALEDFSHL

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

84.6

33.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

82.8

0.74

0.8

77.2

35.9

Minor 5ss

-0.5

66.7

44.2

Minor BPS

82.1

83.91

29.8

Associated Gene:

Gene:

FNBP1L

Ensembl Gene ID:

ENSAPLG00000003118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020087

1165299 - 1184533

19235

ENSAPLT00000003237

1133627 - 1181234

47608