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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11707892_11709866_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11707892 - 11709866
Intron Length:
1975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGATAT
U12 Branch Point Sequence:
ATATCAGGAAAA
Flanking Amino Acid:
HPVLAQQLVKLAERLKLCDP
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
56.3
0.16
1.2
53
42.8
Major PPT
72.4
0.5
0.8
65.1
30.7
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
42.9
-0.5
2.3
58.68
39.9

Associated Gene:

Gene:
SEC16B
Ensembl Gene ID:
ENSAPLG00000015184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015857
11700934 - 11714153
13220