Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11712879_11713095_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11712879 - 11713095

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGACCCCG

5'SS Class:

major

3'SS Sequence:

CTGTGCTTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAC

U12 Branch Point Sequence:

GCCGCTTTGACC

Flanking Amino Acid:

DSAAEEPAAESSGFRWFGWF

Intron Amino Acid Position:

809

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.2

53.2

45.5

Major BPS

74.1

0.6

66.7

39.9

Major PPT

68.5

0.42

1.1

61.4

44.6

Minor 5ss

38.3

-1.3

48.4

47.3

Minor BPS

55.5

0.15

1.4

57.55

42.1

Associated Gene:

Gene:

SEC16B

Ensembl Gene ID:

ENSAPLG00000015184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015857

11700934 - 11714153

13220