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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1173377_1178565_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1173377 - 1178565
Intron Length:
5189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCATATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTTTCTTTAATA
Flanking Amino Acid:
IPSFRSLKRGGPALEDFSHL
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.8
0.74
0.8
77.2
35.9
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
82.1
1
1
83.91
29.8

Associated Gene:

Gene:
FNBP1L
Ensembl Gene ID:
ENSAPLG00000003118
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022217
1165299 - 1182672
17374