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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11771025_11772718_F

Intron Information:

Intron Rank:
145183
Intron Class:
major
Intron Phase:
Intron Coordinates:
11771025 - 11772718
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.5
0.64
0.8
72.7
30.6
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
56.2
0.19
1.8
72.92
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028294
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032685
11749878 - 11772733
22856