About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1180031_1180521_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1180031 - 1180521
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCATTATT
5'SS Class:
major
3'SS Sequence:
CATTATATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
GAATCCTCACAT
Flanking Amino Acid:
INHLVTQGRESPEGSYTDDA
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
83.7
34.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
76.9
0.61
0.9
69.6
39.8
Minor 5ss
37.2
-1.5
2.8
52.2
44.3
Minor BPS
48.2
-0
1.9
65.09
44.3

Associated Gene:

Gene:
FNBP1L
Ensembl Gene ID:
ENSAPLG00000003118
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022217
1165299 - 1182672
17374
ENSAPLT00000020087
1165299 - 1184533
19235
ENSAPLT00000003237
1133627 - 1181234
47608