Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11854508_11855250_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11854508 - 11855250

Intron Length:

743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGGGAG

5'SS Class:

major

3'SS Sequence:

TCTTCCCGCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCGAT

U12 Branch Point Sequence:

TGTCCCTGAAAG

Flanking Amino Acid:

NEKSSMDLTPGSDNAKLSLM

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.3

Major BPS

61.4

0.28

1.3

61.8

44.5

Major PPT

0.43

0.9

62.1

34.7

Minor 5ss

23.5

-3

3.4

28.5

43.9

Minor BPS

58.4

0.13

1.7

64.72

Associated Gene:

Gene:

ASTN1

Ensembl Gene ID:

ENSAPLG00000015372

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016079

11849067 - 11875419

26353

ENSAPLT00000030000

11849067 - 11875419

26353