About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11856133_11856775_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11856133 - 11856775
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TGTCCCTGATGT
Flanking Amino Acid:
LHVPEHLIADGECLCYEGYM
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
70.7
0.47
0.7
64.9
23.9
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
48.7
-0
2
71.48
44.7

Associated Gene:

Gene:
ASTN1
Ensembl Gene ID:
ENSAPLG00000015372
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016079
11849067 - 11875419
26353