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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11856711_11856775_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11856711 - 11856775
Intron Length:
65

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCCGG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TGTCCCTGATGT
Flanking Amino Acid:
PCEHQCDPETGECLCYEGYM
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
54.9
49.4
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
70.7
0.47
0.7
64.9
23.9
Minor 5ss
37.8
-1.4
3.1
48.5
47.1
Minor BPS
48.7
-0
2
71.48
44.7

Associated Gene:

Gene:
ASTN1
Ensembl Gene ID:
ENSAPLG00000015372
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030000
11849067 - 11875419
26353