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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11856861_11862244_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11856861 - 11862244
Intron Length:
5384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTGAT
U12 Branch Point Sequence:
CCAGCGTGATGT
Flanking Amino Acid:
CIRNEWGTNQGPWPYTIFQR
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
50.9
0.02
1.4
45
47.8
Major PPT
79.1
0.65
0.8
69.8
36.7
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
34.1
-1.1
2.3
44.58
46.2

Associated Gene:

Gene:
ASTN1
Ensembl Gene ID:
ENSAPLG00000015372
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030000
11849067 - 11875419
26353
ENSAPLT00000016079
11849067 - 11875419
26353