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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11864260_11864506_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11864260 - 11864506
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
AATTAATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTCCAATTAATT
Flanking Amino Acid:
APGQVLKGTFRQNNFARGLE
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74
0.54
1
63.4
46.2
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
49.7
0.06
1.8
67.5
43.2

Associated Gene:

Gene:
ASTN1
Ensembl Gene ID:
ENSAPLG00000015372
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016079
11849067 - 11875419
26353
ENSAPLT00000030000
11849067 - 11875419
26353