About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11866653_11869252_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11866653 - 11869252
Intron Length:
2600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGAG
U12 Branch Point Sequence:
TTTTCCCCCCTT
Flanking Amino Acid:
LWLEYEDISKGNSPSDESEE
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
44.1
-0.3
1.7
46.5
47
Major PPT
76.8
0.6
0.8
68.1
32.1
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
36.3
-0.9
3.7
72.68
44.5

Associated Gene:

Gene:
ASTN1
Ensembl Gene ID:
ENSAPLG00000015372
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030000
11849067 - 11875419
26353
ENSAPLT00000016079
11849067 - 11875419
26353