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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1186949_1187884_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1186949 - 1187884
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GGTATGTTACTC
Flanking Amino Acid:
PFSKALHEGQEMISSPQNNV
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
77.2
0.61
0.9
68.2
42.3
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
42.8
-0.5
2.2
51.8
39.7

Associated Gene:

Gene:
BCAR3
Ensembl Gene ID:
ENSAPLG00000003983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022843
1185705 - 1206777
21073
ENSAPLT00000019439
1185705 - 1272359
86655
ENSAPLT00000004088
1185705 - 1263931
78227