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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1187997_1188133_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1187997 - 1188133
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTGAACA
Flanking Amino Acid:
AIMKALEMPQVTRLEQTWTS
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.4
30.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72
0.5
1
69
40.7
Minor 5ss
37.4
-1.4
3.2
51.9
44.9
Minor BPS
58.9
0.28
1.5
68.23
38.3

Associated Gene:

Gene:
BCAR3
Ensembl Gene ID:
ENSAPLG00000003983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019439
1185705 - 1272359
86655
ENSAPLT00000004088
1185705 - 1263931
78227
ENSAPLT00000022843
1185705 - 1206777
21073