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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1188306_1189413_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1188306 - 1189413
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATTAATAACC
Flanking Amino Acid:
GHQLRLDLIERHNTMAIGIA
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.1
0.7
0.9
74.3
35.4
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
52.1
0.05
1.9
66.81
37.7

Associated Gene:

Gene:
BCAR3
Ensembl Gene ID:
ENSAPLG00000003983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022843
1185705 - 1206777
21073
ENSAPLT00000019439
1185705 - 1272359
86655
ENSAPLT00000004088
1185705 - 1263931
78227