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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11885804_11898204_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11885804 - 11898204
Intron Length:
12401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTGAATAACC
Flanking Amino Acid:
SGIHCIQSCEPFQADGWCDT
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
72.2
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.7
0.67
0.7
72.8
32
Minor 5ss
29.1
-2.4
2.8
35.6
41
Minor BPS
48.4
-0.1
2.3
68.6
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192