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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1189530_1191334_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1189530 - 1191334
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCACTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AGTTTCAAAACT
Flanking Amino Acid:
AQHILRMDCKVARILGVSEE
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
70.6
0.46
1
69.5
41.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
53.8
0.2
1.9
75.83
40.5

Associated Gene:

Gene:
BCAR3
Ensembl Gene ID:
ENSAPLG00000003983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022843
1185705 - 1206777
21073
ENSAPLT00000019439
1185705 - 1272359
86655
ENSAPLT00000004088
1185705 - 1263931
78227