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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11900962_11902018_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11900962 - 11902018
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAA
U12 Branch Point Sequence:
AAGCCCTCAAGG
Flanking Amino Acid:
EYKCEQGHGIGAVCTPSCII
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
60.8
0.27
1.1
63.2
34.1
Major PPT
81
0.7
0.7
76.4
25.6
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
46.8
-0.3
1.9
49.06
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192