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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11908314_11910175_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11908314 - 11910175
Intron Length:
1862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGAACCCAAACA
Flanking Amino Acid:
FSCVHPAKLQGMNQWLTCLE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67.4
0.39
1.1
60.5
44.8
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
48.3
-0.1
2
63.02
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192