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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11910354_11911605_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11910354 - 11911605
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GGAGCCTCACTT
Flanking Amino Acid:
SSGKSLGSTQQDVVLTCSSG
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
78.9
0.65
0.8
73.6
30.7
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
45.7
-0.2
1.9
58.64
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192