About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11911778_11919500_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11911778 - 11919500
Intron Length:
7723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCCG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCTGGCTGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.2
50.5
45.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
80.5
0.69
0.7
77.3
24.7
Minor 5ss
42.7
-0.8
3.1
57
47.3
Minor BPS
42.4
-0.5
2.1
51.35
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192