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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11919721_11919876_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11919721 - 11919876
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CTTCACCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCCTCTTCACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
75.7
0.58
0.8
69.2
30.9
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
53.3
0.18
1.9
71.32
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192