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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1191973_1193050_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1191973 - 1193050
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AAAATAGTAACT
Flanking Amino Acid:
THQSESYLLIGSRHPSQLPE
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
44.6
-0.3
2.2
62.41
40.9

Associated Gene:

Gene:
BCAR3
Ensembl Gene ID:
ENSAPLG00000003983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019439
1185705 - 1272359
86655
ENSAPLT00000004088
1185705 - 1263931
78227
ENSAPLT00000022843
1185705 - 1206777
21073