About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11920013_11922993_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11920013 - 11922993
Intron Length:
2981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
GACTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCGAC
U12 Branch Point Sequence:
TGTGCTCCGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39.5
Major BPS
48.6
-0
1.2
47.5
37.7
Major PPT
68
0.41
0.9
58.3
38.1
Minor 5ss
35.7
-1.6
3.3
45.9
49.3
Minor BPS
46.7
-0.1
2
68.9
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192
Gene:
Ensembl Gene ID:
ENSAPLG00000020139
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028491
11919755 - 11952099
32345