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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11923132_11924298_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11923132 - 11924298
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
TTGAAAAAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
40.3
-0.7
2.2
55.56
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192
Gene:
Ensembl Gene ID:
ENSAPLG00000020139
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028491
11919755 - 11952099
32345