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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11924851_11925233_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11924851 - 11925233
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
GCTGTCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GTGGTGTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.4
65
42.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
73.6
0.53
0.9
70
36.6
Minor 5ss
34.5
-1.8
2.9
36.7
40.6
Minor BPS
49.6
-0
2.2
63.04
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192
Gene:
Ensembl Gene ID:
ENSAPLG00000020139
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028491
11919755 - 11952099
32345