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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11928099_11929186_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11928099 - 11929186
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATACATGCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
72.6
0.51
1
65.3
41.1
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
40.7
-0.6
2.1
58
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192
Gene:
Ensembl Gene ID:
ENSAPLG00000020139
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028491
11919755 - 11952099
32345