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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11930183_11936342_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11930183 - 11936342
Intron Length:
6160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGAAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TGTGCTTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.2
43.2
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
70.5
0.46
1
59.5
44.9
Minor 5ss
39.2
-1.2
2.9
49.5
46.5
Minor BPS
57
0.3
1.7
74.95
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015807
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016472
11885681 - 11951872
66192
Gene:
Ensembl Gene ID:
ENSAPLG00000020139
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028491
11919755 - 11952099
32345