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Intron Name: Anas_platyrhynchos_platyrhynchos_8_11984938_11986466_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11984938 - 11986466

Intron Length:

1529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGATCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TGTTTTTTAAAC

Flanking Amino Acid:

AYMTKCGHSFCYKCIHQSLE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.9

32.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

77.1

0.61

74.1

39.5

Minor 5ss

40.7

-1

3.1

54.8

43.3

Minor BPS

70.5

0.62

1.3

75.89

33.9

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450