About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11986565_11987809_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11986565 - 11987809
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTCTATTTATTT
Flanking Amino Acid:
NIDHLYPNFLVNELILKQKQ
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
51.6
0.13
1.8
69.14
42.4

Associated Gene:

Gene:
COP1
Ensembl Gene ID:
ENSAPLG00000015973
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047677
11984855 - 12100436
115582
ENSAPLT00000016680
11984855 - 12102304
117450