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Intron Name: Anas_platyrhynchos_platyrhynchos_8_11987887_11990768_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11987887 - 11990768

Intron Length:

2882

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTATGTTCC

5'SS Class:

weak_major

3'SS Sequence:

CTCATCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TTGAACTTAATG

Flanking Amino Acid:

FKLDHSVSSTNGHRWQIIQD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.7

0.28

1.3

59.8

40.2

Major BPS

78.2

0.7

77.9

32.1

Major PPT

0.61

0.8

69.1

36.9

Minor 5ss

49.4

-0

2.3

66.7

37.4

Minor BPS

61.6

0.23

1.6

65.18

42.7

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450