Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12002186_12004033_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12002186 - 12004033

Intron Length:

1848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTAAT

U12 Branch Point Sequence:

TTTGCTGTAATT

Flanking Amino Acid:

VLEEDIKRVEEMSGLYSPVS

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

37.3

Major BPS

72.1

0.55

1.2

73.3

39.1

Major PPT

86.2

0.81

0.8

84.1

30.8

Minor 5ss

31.6

-2.1

3.2

41.1

45.6

Minor BPS

60.2

0.4

2.1

82.98

39.3

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450